Original Article

Reconstruction of Simulated Magnetic Resonance Fingerprinting Using Accelerated Distance Metric Learning

Abstract

Purpose: Magnetic Resonance Fingerprinting (MRF) is a novel framework that uses a random acquisition to acquire a unique tissue response, or fingerprint. Through a pattern-matching algorithm, every voxel-vise fingerprint is matched with a pre-calculated dictionary of simulated fingerprints to obtain MR parameters of interest. Currently, a correlation algorithm performs the MRF matching, which is time-consuming. Moreover, MRF suffers from highly undersampled k-space data, thereby reconstructed images have aliasing artifact, propagated to the estimated quantitative maps. We propose using a distance metric learning method as a matching algorithm and a Singular Value Decomposition (SVD) to compress the dictionary, intending to promote the accuracy of MRF and expedite the matching process.
Material and Methods: In this investigation, a distance metric learning method, called the Relevant Component Analysis (RCA) was used to match the fingerprints from the undersampled data with a compressed dictionary to create quantitative maps accurately and rapidly. An Inversion Recovery Fast Imaging with Steady-State (IR-FISP) MRF sequence was simulated based on an Extended Phase Graph (EPG) on a digital brain phantom. The performance of our work was compared with the original MRF paper.
Results: Effectiveness of our method was evaluated with statistical analysis. Compared with the correlation algorithm and full-sized dictionary, this method acquires tissue parameter maps with more accuracy and better computational speed.
Conclusion: Our numerical results show that learning a distance metric of the undersampled training data accompanied by a compressed dictionary improves the accuracy of the MRF matching and overcomes the computation complexity.

1- D. Ma et al., "Magnetic resonance fingerprinting," Nature, vol. 495, no. 7440, pp. 187-192, 2013.
2- J. H. Lee, B. A. Hargreaves, B. S. Hu, and D. G. Nishimura, "Fast 3D imaging using variable‐density spiral trajectories with applications to limb perfusion," Magnetic Resonance in Medicine: An Official Journal of the International Society for Magnetic Resonance in Medicine, vol. 50, no. 6, pp. 1276-1285, 2003.
3- M. Weigel, "Extended phase graphs: dephasing, RF pulses, and echoes‐pure and simple," Journal of Magnetic Resonance Imaging, vol. 41, no. 2, pp. 266-295, 2015.
4- Z. Wang, H. Li, Q. Zhang, J. Yuan, and X. Wang, "Magnetic resonance fingerprinting with compressed sensing and distance metric learning," Neurocomputing, vol. 174, pp. 560-570, 2016.
5- A. Bar-Hillel, T. Hertz, N. Shental, and D. Weinshall, "Learning a mahalanobis metric from equivalence constraints," Journal of Machine Learning Research, vol. 6, no. Jun, pp. 937-965, 2005.
6- S. C. Hoi, W. Liu, M. R. Lyu, and W.-Y. Ma, "Learning distance metrics with contextual constraints for image retrieval," in 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'06), 2006, vol. 2, pp. 2072-2078: IEEE.
7- M. Sugiyama, "Dimensionality reduction of multimodal labeled data by local fisher discriminant analysis," Journal of machine learning research, vol. 8, no. May, pp. 1027-1061, 2007.
8- D. F. McGivney et al., "SVD compression for magnetic resonance fingerprinting in the time domain," IEEE transactions on medical imaging, vol. 33, no. 12, pp. 2311-2322, 2014.
9- Y. Jiang, D. Ma, N. Seiberlich, V. Gulani, and M. A. Griswold, "MR fingerprinting using fast imaging with steady state precession (FISP) with spiral readout," Magnetic resonance in medicine, vol. 74, no. 6, pp. 1621-1631, 2015.
10- G. H. Golub and C. F. Van Loan, Matrix computations. JHU press, 2012.
11- L. Yang and R. Jin, "Distance metric learning: A comprehensive survey," Michigan State Universiy, vol. 2, no. 2, p. 4, 2006.
12- H. Tan and C. H. Meyer, "Estimation of k‐space trajectories in spiral MRI," Magnetic Resonance in Medicine: An Official Journal of the International Society for Magnetic Resonance in Medicine, vol. 61, no. 6, pp. 1396-1404, 2009.
13- B. A. Hargreaves, D. G. Nishimura, and S. M. Conolly, "Time‐optimal multidimensional gradient waveform design for rapid imaging," Magnetic Resonance in Medicine: An Official Journal of the International Society for Magnetic Resonance in Medicine, vol. 51, no. 1, pp. 81-92, 2004.
14- C. Cocosco, V. Kollokian, R. Kwan, and A. Evans, "Brainweb: Online interface to a 3D MRI simulated brain database; http://www. bic. mni. mcgill. ca/brainweb," NeuroImage, vol. 5, no. 4, p. S425.
15- J. A. Fessler and B. P. Sutton, "Nonuniform fast Fourier transforms using min-max interpolation," IEEE transactions on signal processing, vol. 51, no. 2, pp. 560-574, 2003.
16- A. Botchkarev, "Performance metrics (error measures) in machine learning regression, forecasting and prognostics: Properties and typology," arXiv preprint arXiv:1809.03006, 2018.
17- C. C. Cline et al., "AIR-MRF: Accelerated iterative reconstruction for magnetic resonance fingerprinting," Magnetic resonance imaging, vol. 41, pp. 29-40, 2017.
18- H. Zhou, L. Li, and H. Zhu, "Tensor regression with applications in neuroimaging data analysis," Journal of the American Statistical Association, vol. 108, no. 502, pp. 540-552, 2013.
19- B. Zhao et al., "A model-based approach to accelerated magnetic resonance fingerprinting time series reconstruction," in Proc Intl Soc Mag Reson Med, 2016, vol. 24, p. 871.
20- C. Liao et al., "Acceleration of mr fingerprinting with low rank and sparsity constraint," in Proceedings of the 24th Annual Meeting ISMRM, 2016, vol. 2016, p. 4227.
21- M. Doneva, T. Amthor, P. Koken, K. Sommer, and P. Börnert, "Matrix completion-based reconstruction for undersampled magnetic resonance fingerprinting data," Magnetic resonance imaging, vol. 41, pp. 41-52, 2017.
22- B. Zhao et al., "Improved magnetic resonance fingerprinting reconstruction with low‐rank and subspace modeling," Magnetic resonance in medicine, vol. 79, no. 2, pp. 933-942, 2018.
23- J. Assländer, M. A. Cloos, F. Knoll, D. K. Sodickson, J. Hennig, and R. Lattanzi, "Low rank alternating direction method of multipliers reconstruction for MR fingerprinting," Magnetic resonance in medicine, vol. 79, no. 1, pp. 83-96, 2018.
Files
IssueVol 7 No 1 (2020) QRcode
SectionOriginal Article(s)
DOI https://doi.org/10.18502/fbt.v7i1.2720
Keywords
Magnetic Resonance Fingerprinting Distance Metric Learning Singular Value Decomposition

Rights and permissions
Creative Commons License This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
How to Cite
1.
Yazdani E, Aghabozorgi Sahaf S, Saligheh Rad H. Reconstruction of Simulated Magnetic Resonance Fingerprinting Using Accelerated Distance Metric Learning. Frontiers Biomed Technol. 2020;7(1):3-13.